mod_phases Module

class mod_phases.Phases(cell, movie)

This class is instanciated by a cell object, it contains the functions required to determine if the cell exist, and in which part of the cell cycle it lives

find_phases(cv)

Function that find phases for each image it can be called by a timer, which explains the particular structure

find_phases_GTK(cv, movie_gtk, warning=True)

Functions that locks everything before running find_phases

get_phase()

THIS FUNCTION MUST DISAPPEAR SINCE THE PHASES MODULE HAS BEEN REORGANIZED FOR THE MOMENT IT RETURNS A BINDING TO THE IS_CELL MODULE

get_phases_list()
is_cell()

Returns if this cell is a cell according to several criteria and a custom algorithm

n = None
self.phases_labels = {‘unk’ : (‘Unknown’,’grey’),\
‘noc’ : (‘No cell’,’red’),’cel’ : (‘Cell present’, ‘green’),}

self.v_phases = [‘unk’]*self.n

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